Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gm2420-201ENSMUST00000119864 2149 ntBASIC16■□□□□ 0.15
Col18a1P39061 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Col18a1P39061 AC154262.2-202ENSMUST00000225158 1331 ntBASIC16■□□□□ 0.15
Col18a1P39061 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col18a1P39061 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gm25569-201ENSMUST00000157175 131 ntBASIC16■□□□□ 0.15
Col18a1P39061 Mir8093-201ENSMUST00000185043 137 ntBASIC16■□□□□ 0.15
Col18a1P39061 Gm43506-201ENSMUST00000200675 753 ntBASIC16■□□□□ 0.15
Col18a1P39061 Gm7192-201ENSMUST00000210793 1137 ntBASIC16■□□□□ 0.15
Col18a1P39061 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC16■□□□□ 0.15
Col18a1P39061 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Col18a1P39061 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Col18a1P39061 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC16■□□□□ 0.15
Col18a1P39061 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Col18a1P39061 AC174797.1-201ENSMUST00000224339 1649 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Col18a1P39061 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Col18a1P39061 Gm24279-201ENSMUST00000104236 131 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Gm15528-201ENSMUST00000117821 864 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Gm37452-201ENSMUST00000194416 1160 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Gm43249-201ENSMUST00000200464 458 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Gm45310-201ENSMUST00000210436 275 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC15.99■□□□□ 0.15
Col18a1P39061 AC134869.4-202ENSMUST00000224350 837 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Gm5468-202ENSMUST00000227851 682 ntBASIC15.99■□□□□ 0.15
Col18a1P39061 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col18a1P39061 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Col18a1P39061 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col18a1P39061 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col18a1P39061 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
Col18a1P39061 Gm13094-201ENSMUST00000117930 409 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gm12418-201ENSMUST00000118116 942 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gm15982-201ENSMUST00000121681 554 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gm24078-201ENSMUST00000158184 103 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Mir6973a-201ENSMUST00000183646 78 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gm5996-201ENSMUST00000211110 718 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Gm2594-201ENSMUST00000214774 742 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Col18a1P39061 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Zkscan3-207ENSMUST00000223831 2101 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Col18a1P39061 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Gm44414-201ENSMUST00000203660 2109 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col18a1P39061 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.98■□□□□ 0.15
Col18a1P39061 Gm14497-201ENSMUST00000119537 580 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gm15549-201ENSMUST00000121595 622 ntBASIC15.98■□□□□ 0.15
Col18a1P39061 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC15.98■□□□□ 0.15
Col18a1P39061 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC15.98■□□□□ 0.15
Col18a1P39061 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
Col18a1P39061 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC15.97■□□□□ 0.15
Col18a1P39061 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC15.97■□□□□ 0.15
Col18a1P39061 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms