Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm18041-201ENSMUST00000218210 618 ntBASIC9.83□□□□□ -0.84
Hoxd3P09027 AC138604.1-201ENSMUST00000226969 739 ntBASIC9.83□□□□□ -0.84
Hoxd3P09027 AC167013.1-201ENSMUST00000228592 202 ntBASIC9.83□□□□□ -0.84
Hoxd3P09027 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Gm904-201ENSMUST00000099519 649 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC9.83□□□□□ -0.84
Hoxd3P09027 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hoxd3P09027 Gm3287-205ENSMUST00000228893 1332 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm7789-202ENSMUST00000211273 1400 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm12088-201ENSMUST00000137364 520 ntTSL 2 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 5330439A09Rik-201ENSMUST00000162770 1117 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC9.82□□□□□ -0.84
Hoxd3P09027 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm8902-201ENSMUST00000174341 1096 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Prl3c1-203ENSMUST00000178072 579 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm26956-201ENSMUST00000182176 986 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm7118-201ENSMUST00000200167 1003 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm44777-203ENSMUST00000206930 571 ntTSL 3 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Olfr206-202ENSMUST00000207927 1122 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm19963-201ENSMUST00000208413 1255 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Olfr724-202ENSMUST00000213390 1152 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 AC154441.1-201ENSMUST00000223653 1006 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 CT009713.10-202ENSMUST00000225734 696 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Ermard-209ENSMUST00000226561 1019 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Nsmce2-201ENSMUST00000079703 1054 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC9.82□□□□□ -0.84
Hoxd3P09027 Daam2-202ENSMUST00000224595 1926 ntBASIC9.82□□□□□ -0.84
Hoxd3P09027 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hoxd3P09027 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms