Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm26315-201ENSMUST00000083890 321 ntBASIC10.25□□□□□ -0.77
Hmgb3O54879 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Aebp2-201ENSMUST00000032359 5932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Ube3a-203ENSMUST00000200758 9856 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 F730311O21Rik-201ENSMUST00000189288 5447 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Myom2-201ENSMUST00000033842 5075 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm26464-201ENSMUST00000157094 305 ntBASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Myo15-202ENSMUST00000081823 7953 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Zdbf2-201ENSMUST00000029025 12112 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Helz2-202ENSMUST00000108831 10109 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
Hmgb3O54879 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hmgb3O54879 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Ccdc187-203ENSMUST00000227200 9528 ntAPPRIS ALT2 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Mypn-201ENSMUST00000095580 5246 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC10.23□□□□□ -0.77
Hmgb3O54879 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm9522-201ENSMUST00000182394 926 ntBASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm27680-201ENSMUST00000184192 160 ntBASIC10.23□□□□□ -0.77
Hmgb3O54879 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 172.6 ms