Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm28695-201ENSMUST00000190300 697 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm37448-201ENSMUST00000192795 697 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm19208-201ENSMUST00000213861 912 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
Chd3B1AR17 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Chd3B1AR17 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chd3B1AR17 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm10051-201ENSMUST00000145209 414 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Gm37666-201ENSMUST00000194110 866 ntBASIC12.14□□□□□ -0.47
Chd3B1AR17 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.14□□□□□ -0.47
Chd3B1AR17 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC12.14□□□□□ -0.47
Chd3B1AR17 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Chd3B1AR17 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
Chd3B1AR17 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Chd3B1AR17 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm11930-201ENSMUST00000117788 190 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm14017-201ENSMUST00000121934 386 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm22902-201ENSMUST00000158488 302 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC12.13□□□□□ -0.47
Chd3B1AR17 AC153974.2-201ENSMUST00000218577 1025 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.13□□□□□ -0.47
Chd3B1AR17 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Chd3B1AR17 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Chd3B1AR17 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chd3B1AR17 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm28882-201ENSMUST00000185504 314 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm9230-201ENSMUST00000188228 532 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm43962-201ENSMUST00000203898 190 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm807-202ENSMUST00000224929 408 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Chd3B1AR17 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms