Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 2410003L11Rik-202ENSMUST00000145262 642 ntTSL 3 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm8738-201ENSMUST00000172606 329 ntBASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm5904-201ENSMUST00000210286 865 ntBASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm19309-201ENSMUST00000218295 205 ntBASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.7□□□□□ -0.22
Prpf40aQ9R1C7 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm22018-201ENSMUST00000104357 131 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Mir1247-201ENSMUST00000116706 82 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm38002-201ENSMUST00000193255 180 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm26035-201ENSMUST00000083065 308 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC13.69□□□□□ -0.22
Prpf40aQ9R1C7 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 AC164702.1-201ENSMUST00000220135 2212 ntBASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Gm42627-201ENSMUST00000197347 224 ntBASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Gm45574-201ENSMUST00000210921 331 ntBASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Gm10478-201ENSMUST00000084451 396 ntBASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.68□□□□□ -0.22
Prpf40aQ9R1C7 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms