Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm6283-201ENSMUST00000182369 1000 ntBASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm18206-201ENSMUST00000207027 926 ntBASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Shd-206ENSMUST00000225145 998 ntBASIC11.1□□□□□ -0.63
Trem1Q9JKE2 AC154621.1-201ENSMUST00000226155 1119 ntBASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Fam71e2-202ENSMUST00000174409 2716 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm37954-201ENSMUST00000195400 2071 ntBASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trem1Q9JKE2 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm38192-201ENSMUST00000194364 1847 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Itga7-202ENSMUST00000218290 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm44335-201ENSMUST00000196879 141 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm44297-201ENSMUST00000198304 141 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm44346-201ENSMUST00000198851 141 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm45841-201ENSMUST00000207700 164 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 AC160562.2-201ENSMUST00000216374 2201 ntTSL 2 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Trp63-207ENSMUST00000115308 2380 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Gm13859-201ENSMUST00000119936 1423 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trem1Q9JKE2 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.09□□□□□ -0.63
Trem1Q9JKE2 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Trem1Q9JKE2 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Trem1Q9JKE2 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trem1Q9JKE2 Stox2-206ENSMUST00000210030 2734 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trem1Q9JKE2 Pabpc4-201ENSMUST00000078734 2700 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms