Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Rmrp-201ENSMUST00000157463 271 ntBASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Gm24548-201ENSMUST00000158650 108 ntBASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.93□□□□□ -0.18
Ushbp1Q8R370 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ushbp1Q8R370 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm24830-201ENSMUST00000102024 166 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm12502-201ENSMUST00000120197 444 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm25890-201ENSMUST00000177643 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm22614-201ENSMUST00000178300 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Mir6979-201ENSMUST00000183927 56 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm9445-201ENSMUST00000207454 1285 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm30285-201ENSMUST00000214614 422 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm22042-201ENSMUST00000082989 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm26232-201ENSMUST00000083360 166 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm24136-201ENSMUST00000083374 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm26110-201ENSMUST00000083971 165 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ushbp1Q8R370 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 106.6 ms