Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ubfd1Q78JW9 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Gm14028-201ENSMUST00000117434 479 ntBASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Gm8913-201ENSMUST00000209491 641 ntBASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 AC154252.2-201ENSMUST00000223593 767 ntBASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Gm8385-201ENSMUST00000058999 643 ntBASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ubfd1Q78JW9 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm26461-201ENSMUST00000175064 290 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm27341-201ENSMUST00000183570 106 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Rps4l-202ENSMUST00000204242 789 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm45224-201ENSMUST00000208203 414 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm45433-201ENSMUST00000209386 247 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Gm19208-201ENSMUST00000213861 912 ntBASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ubfd1Q78JW9 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms