Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm7029-201ENSMUST00000173226 450 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm7584-201ENSMUST00000175829 940 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm43133-201ENSMUST00000197472 463 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm3961-201ENSMUST00000204425 994 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Gm8706-201ENSMUST00000197372 1491 ntBASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Gm13350-201ENSMUST00000120519 479 ntBASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Gm13123-201ENSMUST00000122173 492 ntBASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Gm25927-201ENSMUST00000175058 117 ntBASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Gm42627-201ENSMUST00000197347 224 ntBASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sh3rf1Q69ZI1 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms