Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm21759-201ENSMUST00000178345 1828 ntBASIC14.41□□□□□ -0.1
Rnf180Q3U827 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Rnf180Q3U827 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf180Q3U827 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm24231-201ENSMUST00000104315 133 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm12684-201ENSMUST00000118675 999 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm13281-201ENSMUST00000120871 567 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Mir8093-201ENSMUST00000185043 137 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm45060-201ENSMUST00000203293 593 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm18256-201ENSMUST00000209087 907 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 CT025689.1-201ENSMUST00000225214 283 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 AC093022.5-201ENSMUST00000226841 1079 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Gm5449-201ENSMUST00000081132 357 ntBASIC14.4□□□□□ -0.1
Rnf180Q3U827 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf180Q3U827 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm24294-201ENSMUST00000158295 277 ntBASIC14.39□□□□□ -0.11
Rnf180Q3U827 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm5190-201ENSMUST00000192434 357 ntBASIC14.39□□□□□ -0.11
Rnf180Q3U827 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 AC156790.2-201ENSMUST00000227115 568 ntBASIC14.39□□□□□ -0.11
Rnf180Q3U827 Rps3a2-201ENSMUST00000074245 792 ntBASIC14.39□□□□□ -0.11
Rnf180Q3U827 Rps3a3-201ENSMUST00000074680 795 ntBASIC14.39□□□□□ -0.11
Rnf180Q3U827 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnf180Q3U827 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Gm12345-201ENSMUST00000119288 898 ntBASIC14.38□□□□□ -0.11
Rnf180Q3U827 Gm12164-201ENSMUST00000121695 551 ntBASIC14.38□□□□□ -0.11
Rnf180Q3U827 Gm16030-201ENSMUST00000159098 603 ntBASIC14.38□□□□□ -0.11
Rnf180Q3U827 Osgep-207ENSMUST00000162177 1219 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Kif4-ps-202ENSMUST00000185083 652 ntBASIC14.38□□□□□ -0.11
Rnf180Q3U827 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Gm8234-201ENSMUST00000198523 1107 ntBASIC14.38□□□□□ -0.11
Rnf180Q3U827 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf180Q3U827 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms