Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col17a1Q07563 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col17a1Q07563 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
Col17a1Q07563 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col17a1Q07563 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Col17a1Q07563 AC022682.1-201ENSMUST00000224624 2023 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Mir598-201ENSMUST00000102094 79 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm24933-201ENSMUST00000103762 110 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm23252-201ENSMUST00000103776 110 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm23582-201ENSMUST00000158530 139 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm26443-201ENSMUST00000179610 110 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Mir6934-201ENSMUST00000183965 62 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Mir7035-201ENSMUST00000184713 82 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Gm2566-201ENSMUST00000201267 431 ntBASIC18.64■□□□□ 0.57
Col17a1Q07563 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC18.64■□□□□ 0.57
Col17a1Q07563 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col17a1Q07563 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col17a1Q07563 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Rnf17-202ENSMUST00000223627 2077 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Col17a1Q07563 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC18.63■□□□□ 0.57
Col17a1Q07563 Gm7815-201ENSMUST00000196104 832 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC18.63■□□□□ 0.57
Col17a1Q07563 AC154305.2-201ENSMUST00000225813 901 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 Gm5292-201ENSMUST00000073317 580 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 Fcer1g-201ENSMUST00000079957 674 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Arxes1-201ENSMUST00000057625 1580 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col17a1Q07563 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Gm43807-201ENSMUST00000200678 1781 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC18.63■□□□□ 0.57
Col17a1Q07563 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col17a1Q07563 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Col17a1Q07563 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm37691-201ENSMUST00000192147 2573 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm22937-201ENSMUST00000103954 131 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm12389-201ENSMUST00000117696 418 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm14227-201ENSMUST00000119431 629 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm14247-201ENSMUST00000120950 237 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm17514-201ENSMUST00000181863 1102 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC18.62■□□□□ 0.57
Col17a1Q07563 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 AC138604.1-201ENSMUST00000226969 739 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm4782-201ENSMUST00000168705 2046 ntBASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col17a1Q07563 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC18.62■□□□□ 0.57
Col17a1Q07563 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Col17a1Q07563 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms