Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
Col6a1Q04857 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
Col6a1Q04857 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.74□□□□□ -0.21
Col6a1Q04857 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Gm11941-201ENSMUST00000119904 610 ntBASIC13.74□□□□□ -0.21
Col6a1Q04857 Gm14999-201ENSMUST00000121039 624 ntBASIC13.74□□□□□ -0.21
Col6a1Q04857 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Gm4607-201ENSMUST00000206649 577 ntBASIC13.74□□□□□ -0.21
Col6a1Q04857 Gm21027-201ENSMUST00000219300 1236 ntBASIC13.74□□□□□ -0.21
Col6a1Q04857 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Col6a1Q04857 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col6a1Q04857 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 Mir680-2-201ENSMUST00000102163 110 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 Gm23251-201ENSMUST00000103773 110 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Gm14058-201ENSMUST00000116082 735 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 Gm14644-201ENSMUST00000116671 647 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 Gm7666-201ENSMUST00000146631 819 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.73□□□□□ -0.21
Col6a1Q04857 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.73□□□□□ -0.21
Col6a1Q04857 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.73□□□□□ -0.21
Col6a1Q04857 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 AC132901.1-201ENSMUST00000224345 508 ntBASIC13.73□□□□□ -0.21
Col6a1Q04857 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.73□□□□□ -0.21
Col6a1Q04857 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col6a1Q04857 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Col6a1Q04857 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Col6a1Q04857 AC137842.1-201ENSMUST00000227896 2064 ntBASIC13.72□□□□□ -0.21
Col6a1Q04857 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.72□□□□□ -0.21
Col6a1Q04857 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Col6a1Q04857 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Rn7s6-201ENSMUST00000175005 291 ntBASIC13.72□□□□□ -0.21
Col6a1Q04857 Gm28071-201ENSMUST00000190355 478 ntBASIC13.72□□□□□ -0.21
Col6a1Q04857 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Col6a1Q04857 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col6a1Q04857 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 70.8 ms