Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC10.63□□□□□ -0.71
Col8a1Q00780 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm5525-201ENSMUST00000190438 1312 ntBASIC10.62□□□□□ -0.71
Col8a1Q00780 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm9358-201ENSMUST00000183067 927 ntBASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm28882-201ENSMUST00000185504 314 ntBASIC10.62□□□□□ -0.71
Col8a1Q00780 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm17889-201ENSMUST00000198410 598 ntBASIC10.62□□□□□ -0.71
Col8a1Q00780 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC10.62□□□□□ -0.71
Col8a1Q00780 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Gm37133-201ENSMUST00000192705 1922 ntBASIC10.62□□□□□ -0.71
Col8a1Q00780 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.71
Col8a1Q00780 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col8a1Q00780 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 AC154262.2-201ENSMUST00000224310 2293 ntBASIC10.61□□□□□ -0.71
Col8a1Q00780 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Gm12816-201ENSMUST00000118069 1212 ntBASIC10.61□□□□□ -0.71
Col8a1Q00780 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC10.61□□□□□ -0.71
Col8a1Q00780 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Gm37028-201ENSMUST00000194276 107 ntBASIC10.61□□□□□ -0.71
Col8a1Q00780 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC10.61□□□□□ -0.71
Col8a1Q00780 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Gm5879-201ENSMUST00000089501 1209 ntBASIC10.61□□□□□ -0.71
Col8a1Q00780 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col8a1Q00780 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC10.61□□□□□ -0.71
Col8a1Q00780 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms