Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gm6992-201ENSMUST00000217973 1607 ntBASIC14.81□□□□□ -0.04
Rfx1P48377 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
Rfx1P48377 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Rfx1P48377 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gm13369-201ENSMUST00000119442 987 ntBASIC14.81□□□□□ -0.04
Rfx1P48377 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Rfx1P48377 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 AC159006.1-201ENSMUST00000226396 258 ntBASIC14.81□□□□□ -0.04
Rfx1P48377 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Rfx1P48377 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Rfx1P48377 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Rfx1P48377 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Rfx1P48377 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Rfx1P48377 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm19692-201ENSMUST00000203856 2084 ntBASIC14.8□□□□□ -0.04
Rfx1P48377 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm13612-201ENSMUST00000119276 390 ntBASIC14.8□□□□□ -0.04
Rfx1P48377 Gm15703-201ENSMUST00000120250 880 ntBASIC14.8□□□□□ -0.04
Rfx1P48377 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC14.8□□□□□ -0.04
Rfx1P48377 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
Rfx1P48377 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.8□□□□□ -0.04
Rfx1P48377 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Rfx1P48377 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.8□□□□□ -0.04
Rfx1P48377 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC14.8□□□□□ -0.04
Rfx1P48377 AC155252.1-201ENSMUST00000226462 1208 ntBASIC14.8□□□□□ -0.04
Rfx1P48377 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Rfx1P48377 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Rfx1P48377 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Rfx1P48377 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx1P48377 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
Rfx1P48377 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Rfx1P48377 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 Gm43417-201ENSMUST00000201586 5207 ntBASIC14.79□□□□□ -0.04
Rfx1P48377 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Rfx1P48377 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC14.79□□□□□ -0.04
Rfx1P48377 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 Gm26185-201ENSMUST00000157692 266 ntBASIC14.79□□□□□ -0.04
Rfx1P48377 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx1P48377 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms