Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.52□□□□□ -0.57
Cd40lgP27548 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Cd40lgP27548 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Cd40lgP27548 Gm18222-201ENSMUST00000202416 1387 ntBASIC11.52□□□□□ -0.57
Cd40lgP27548 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Cd40lgP27548 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cd40lgP27548 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Mir1247-201ENSMUST00000116706 82 ntBASIC11.51□□□□□ -0.57
Cd40lgP27548 Gm12291-201ENSMUST00000121627 311 ntBASIC11.51□□□□□ -0.57
Cd40lgP27548 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Gm22121-201ENSMUST00000175148 54 ntBASIC11.51□□□□□ -0.57
Cd40lgP27548 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Gm38266-201ENSMUST00000194931 421 ntBASIC11.51□□□□□ -0.57
Cd40lgP27548 Gm43133-201ENSMUST00000197472 463 ntBASIC11.51□□□□□ -0.57
Cd40lgP27548 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.51□□□□□ -0.57
Cd40lgP27548 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.51□□□□□ -0.57
Cd40lgP27548 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cd40lgP27548 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm11591-201ENSMUST00000120063 702 ntBASIC11.5□□□□□ -0.57
Cd40lgP27548 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm7809-201ENSMUST00000153199 742 ntBASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm25261-201ENSMUST00000157416 134 ntBASIC11.5□□□□□ -0.57
Cd40lgP27548 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.5□□□□□ -0.57
Cd40lgP27548 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm37489-201ENSMUST00000191883 159 ntBASIC11.5□□□□□ -0.57
Cd40lgP27548 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cd40lgP27548 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC11.5□□□□□ -0.57
Cd40lgP27548 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms