Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.17□□□□□ -0.3
TnfP06804 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Mir3102-201ENSMUST00000175555 104 ntBASIC13.17□□□□□ -0.3
TnfP06804 Gm43068-201ENSMUST00000201095 1273 ntBASIC13.17□□□□□ -0.3
TnfP06804 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Gm19208-201ENSMUST00000213861 912 ntBASIC13.17□□□□□ -0.3
TnfP06804 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.17□□□□□ -0.3
TnfP06804 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
TnfP06804 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.17□□□□□ -0.3
TnfP06804 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
TnfP06804 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
TnfP06804 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TnfP06804 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 CU062626.3-201ENSMUST00000225522 1411 ntBASIC13.16□□□□□ -0.3
TnfP06804 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
TnfP06804 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
TnfP06804 Gm7857-201ENSMUST00000117957 358 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.16□□□□□ -0.3
TnfP06804 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
TnfP06804 Mir6927-201ENSMUST00000184494 71 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm29615-201ENSMUST00000185371 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28224-201ENSMUST00000186078 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm29001-201ENSMUST00000186177 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28292-201ENSMUST00000186593 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28450-201ENSMUST00000187349 638 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28101-201ENSMUST00000187608 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm29076-201ENSMUST00000187689 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28302-201ENSMUST00000187931 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Gm28646-201ENSMUST00000188220 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28205-201ENSMUST00000189177 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm29032-201ENSMUST00000189797 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm28695-201ENSMUST00000190300 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Gm37448-201ENSMUST00000192795 697 ntBASIC13.16□□□□□ -0.3
TnfP06804 Gm9445-201ENSMUST00000207454 1285 ntBASIC13.16□□□□□ -0.3
TnfP06804 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.16□□□□□ -0.3
TnfP06804 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
TnfP06804 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TnfP06804 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
TnfP06804 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.15□□□□□ -0.3
TnfP06804 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.15□□□□□ -0.3
TnfP06804 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC13.15□□□□□ -0.3
TnfP06804 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.15□□□□□ -0.3
TnfP06804 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC13.15□□□□□ -0.3
TnfP06804 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC13.15□□□□□ -0.3
TnfP06804 AC153974.2-201ENSMUST00000218577 1025 ntBASIC13.15□□□□□ -0.3
TnfP06804 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.15□□□□□ -0.3
TnfP06804 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TnfP06804 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
TnfP06804 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms