Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm2606-201ENSMUST00000100754 1002 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm24830-201ENSMUST00000102024 166 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm12286-201ENSMUST00000119246 1002 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm12749-201ENSMUST00000122138 1159 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm25890-201ENSMUST00000177643 165 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm22614-201ENSMUST00000178300 165 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm4857-201ENSMUST00000192718 785 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm10312-201ENSMUST00000078515 489 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm22042-201ENSMUST00000082989 165 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm26232-201ENSMUST00000083360 166 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm26110-201ENSMUST00000083971 165 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.36□□□□□ -0.27
Cpsf3Q9QXK7 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 CT009713.10-202ENSMUST00000225734 696 ntBASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.35□□□□□ -0.27
Cpsf3Q9QXK7 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms