Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.13□□□□□ -0.47
Msh4Q99MT2 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.13□□□□□ -0.47
Msh4Q99MT2 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Gm5781-201ENSMUST00000219792 443 ntBASIC12.13□□□□□ -0.47
Msh4Q99MT2 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Olfr582-201ENSMUST00000098212 960 ntBASIC12.13□□□□□ -0.47
Msh4Q99MT2 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.13□□□□□ -0.47
Msh4Q99MT2 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.13□□□□□ -0.47
Msh4Q99MT2 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC12.13□□□□□ -0.47
Msh4Q99MT2 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Mir6420-201ENSMUST00000185032 102 ntBASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gm29396-201ENSMUST00000185659 716 ntBASIC12.12□□□□□ -0.47
Msh4Q99MT2 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Olfr284-202ENSMUST00000206647 966 ntBASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.12□□□□□ -0.47
Msh4Q99MT2 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gm45930-201ENSMUST00000221330 292 ntBASIC12.12□□□□□ -0.47
Msh4Q99MT2 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.12□□□□□ -0.47
Msh4Q99MT2 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Msh4Q99MT2 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Msh4Q99MT2 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.11□□□□□ -0.47
Msh4Q99MT2 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms