Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdk5rap3Q99LM2 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
Cdk5rap3Q99LM2 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Gm7029-201ENSMUST00000173226 450 ntBASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdk5rap3Q99LM2 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Gm37660-201ENSMUST00000192754 1732 ntBASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Gm15806-201ENSMUST00000120696 955 ntBASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Gm42599-201ENSMUST00000201308 469 ntBASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdk5rap3Q99LM2 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 58.6 ms