Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Usp40Q8BWR4 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Usp40Q8BWR4 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Usp40Q8BWR4 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm4735-201ENSMUST00000138679 1302 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm5855-201ENSMUST00000200240 1305 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 AC171277.1-201ENSMUST00000216902 1441 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm12164-201ENSMUST00000121695 551 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm25881-201ENSMUST00000157783 103 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 CT571245.2-201ENSMUST00000218421 305 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 AC154276.3-201ENSMUST00000227643 998 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm44260-201ENSMUST00000204946 2094 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm43677-201ENSMUST00000198098 2378 ntBASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Usp40Q8BWR4 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Gm18711-201ENSMUST00000199341 750 ntBASIC16.98■□□□□ 0.31
Usp40Q8BWR4 AC154680.1-201ENSMUST00000224376 859 ntBASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Usp40Q8BWR4 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm9361-201ENSMUST00000198695 1507 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm11509-201ENSMUST00000117358 325 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm12196-201ENSMUST00000120954 262 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm5733-201ENSMUST00000190232 939 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Ighv4-2-201ENSMUST00000192975 362 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm26448-201ENSMUST00000082446 203 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 AC123834.1-201ENSMUST00000225346 2043 ntBASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms