Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim40Q3UWA4 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Syt7-204ENSMUST00000223586 1344 ntBASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC11.67□□□□□ -0.54
Trim40Q3UWA4 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Gm19220-201ENSMUST00000222682 803 ntBASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim40Q3UWA4 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 AC126262.1-201ENSMUST00000221802 1904 ntBASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gm15920-201ENSMUST00000118998 402 ntBASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gm15321-201ENSMUST00000121290 288 ntBASIC11.66□□□□□ -0.54
Trim40Q3UWA4 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim40Q3UWA4 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Gm42612-201ENSMUST00000197986 623 ntBASIC11.65□□□□□ -0.54
Trim40Q3UWA4 Gm43170-201ENSMUST00000199827 612 ntBASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms