Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Gm10146-201ENSMUST00000072739 309 ntBASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Pck2-205ENSMUST00000226352 2784 ntBASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Usp39Q3TIX9 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm15703-201ENSMUST00000120250 880 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm19184-201ENSMUST00000196798 928 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm45880-201ENSMUST00000213041 853 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Daam2-202ENSMUST00000224595 1926 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Usp39Q3TIX9 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 AC165260.3-202ENSMUST00000224550 1031 ntBASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Gm6992-201ENSMUST00000217973 1607 ntBASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp39Q3TIX9 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 83.6 ms