Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Traf1P39428 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Traf1P39428 Rab3c-202ENSMUST00000223922 2398 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 AC164426.2-201ENSMUST00000225993 2492 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Gm5846-201ENSMUST00000193146 1414 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Paupar-201ENSMUST00000194826 3482 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Gm12015-201ENSMUST00000117065 843 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Gm14832-201ENSMUST00000121289 322 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC14.42□□□□□ -0.1
Traf1P39428 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Traf1P39428 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Traf1P39428 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC14.42□□□□□ -0.1
Traf1P39428 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Rprl1-202ENSMUST00000198476 238 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Gm45186-201ENSMUST00000206874 478 ntBASIC14.42□□□□□ -0.1
Traf1P39428 AC125209.1-201ENSMUST00000225812 766 ntBASIC14.42□□□□□ -0.1
Traf1P39428 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Traf1P39428 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Traf1P39428 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Gm11597-201ENSMUST00000121423 964 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.41□□□□□ -0.1
Traf1P39428 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Rn7s1-201ENSMUST00000174924 300 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Rn7s2-201ENSMUST00000175032 300 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Gm26461-201ENSMUST00000175064 290 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Gm43068-201ENSMUST00000201095 1273 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.41□□□□□ -0.1
Traf1P39428 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Traf1P39428 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Traf1P39428 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.4□□□□□ -0.1
Traf1P39428 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms