Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC16.06■□□□□ 0.16
Col18a1P39061 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Adora3-202ENSMUST00000164730 1219 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC16.06■□□□□ 0.16
Col18a1P39061 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
Col18a1P39061 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Lockd-205ENSMUST00000185152 496 ntTSL 5 BASIC16.06■□□□□ 0.16
Col18a1P39061 Rpl13-ps4-201ENSMUST00000194776 628 ntBASIC16.06■□□□□ 0.16
Col18a1P39061 AC134248.1-201ENSMUST00000216113 1176 ntBASIC16.06■□□□□ 0.16
Col18a1P39061 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Gm5780-201ENSMUST00000217774 1834 ntBASIC16.06■□□□□ 0.16
Col18a1P39061 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Gm10176-201ENSMUST00000159707 2264 ntBASIC16.06■□□□□ 0.16
Col18a1P39061 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC16.06■□□□□ 0.16
Col18a1P39061 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC16.06■□□□□ 0.16
Col18a1P39061 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col18a1P39061 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm25562-201ENSMUST00000104608 133 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm3329-201ENSMUST00000159873 556 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm7627-201ENSMUST00000183205 999 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm5599-201ENSMUST00000209602 788 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Gm19046-201ENSMUST00000221263 1298 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Col18a1P39061 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
Col18a1P39061 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm38344-201ENSMUST00000195306 1353 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.05■□□□□ 0.16
Col18a1P39061 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Sybu-209ENSMUST00000228639 4113 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm12389-201ENSMUST00000117696 418 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Col18a1P39061 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC16.05■□□□□ 0.16
Col18a1P39061 AC154759.1-201ENSMUST00000224137 1159 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Col18a1P39061 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 AC160405.1-201ENSMUST00000218207 1545 ntBASIC16.05■□□□□ 0.16
Col18a1P39061 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col18a1P39061 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Col18a1P39061 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Gm9415-201ENSMUST00000200462 1321 ntBASIC16.04■□□□□ 0.16
Col18a1P39061 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Col18a1P39061 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Col18a1P39061 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Gm14234-201ENSMUST00000119539 845 ntBASIC16.04■□□□□ 0.16
Col18a1P39061 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Gm9204-201ENSMUST00000212641 947 ntBASIC16.04■□□□□ 0.16
Col18a1P39061 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
Col18a1P39061 Gm9487-201ENSMUST00000216600 472 ntBASIC16.04■□□□□ 0.16
Col18a1P39061 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Col18a1P39061 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC16.04■□□□□ 0.16
Col18a1P39061 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Col18a1P39061 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col18a1P39061 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Col18a1P39061 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Gm25830-201ENSMUST00000158923 132 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 Gm8756-201ENSMUST00000183250 929 ntBASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 74.6 ms