Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Cdx1P18111 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
Cdx1P18111 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Cdx1P18111 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 AC154527.2-201ENSMUST00000225256 1466 ntBASIC10.1□□□□□ -0.79
Cdx1P18111 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 Gm7224-201ENSMUST00000121359 2066 ntBASIC10.1□□□□□ -0.79
Cdx1P18111 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Cdx1P18111 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Cdx1P18111 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 Mir692-1-201ENSMUST00000102263 109 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC10.09□□□□□ -0.79
Cdx1P18111 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
Cdx1P18111 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Gm27892-201ENSMUST00000185017 106 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC10.09□□□□□ -0.79
Cdx1P18111 AC125350.2-201ENSMUST00000224737 727 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Gm5356-201ENSMUST00000093326 615 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC10.09□□□□□ -0.79
Cdx1P18111 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Gm38187-201ENSMUST00000195609 4709 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
Cdx1P18111 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC10.09□□□□□ -0.79
Cdx1P18111 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC10.09□□□□□ -0.79
Cdx1P18111 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC10.09□□□□□ -0.79
Cdx1P18111 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx1P18111 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm43931-201ENSMUST00000204817 2870 ntBASIC10.08□□□□□ -0.8
Cdx1P18111 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Cdx1P18111 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Cdx1P18111 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC10.08□□□□□ -0.8
Cdx1P18111 Mir1938-201ENSMUST00000158746 100 ntBASIC10.08□□□□□ -0.8
Cdx1P18111 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 AC156560.2-201ENSMUST00000221232 264 ntBASIC10.08□□□□□ -0.8
Cdx1P18111 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Cdx1P18111 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms