Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm14822-201ENSMUST00000122247 291 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm43094-201ENSMUST00000196549 921 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC10.29□□□□□ -0.76
Hmgb3O54879 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Ccdc186-202ENSMUST00000118592 6445 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm45191-201ENSMUST00000205846 5439 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 AC154767.3-201ENSMUST00000225150 1342 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Son-201ENSMUST00000114036 7945 ntTSL 5 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Adcy7-204ENSMUST00000171456 5951 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm7967-202ENSMUST00000191042 5042 ntBASIC10.28□□□□□ -0.76
Hmgb3O54879 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm15376-201ENSMUST00000122258 783 ntBASIC10.28□□□□□ -0.76
Hmgb3O54879 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm27618-201ENSMUST00000183671 60 ntBASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm17837-201ENSMUST00000186435 985 ntBASIC10.28□□□□□ -0.76
Hmgb3O54879 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Flna-203ENSMUST00000114299 8456 ntAPPRIS P2 TSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Son-204ENSMUST00000119368 7529 ntTSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC10.28□□□□□ -0.76
Hmgb3O54879 Gm43984-201ENSMUST00000204572 2864 ntBASIC10.28□□□□□ -0.76
Hmgb3O54879 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Hmgb3O54879 Acan-201ENSMUST00000032835 7355 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Tmc3-201ENSMUST00000039317 6221 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Hmgb3O54879 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm14767-201ENSMUST00000121559 586 ntBASIC10.27□□□□□ -0.77
Hmgb3O54879 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC10.27□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 269.5 ms