Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lima1Q9ERG0 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.54■□□□□ 0.88
Lima1Q9ERG0 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lima1Q9ERG0 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lima1Q9ERG0 Iqck-206ENSMUST00000208658 2891 ntBASIC20.54■□□□□ 0.88
Lima1Q9ERG0 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Lima1Q9ERG0 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lima1Q9ERG0 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lima1Q9ERG0 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lima1Q9ERG0 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lima1Q9ERG0 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Gm12366-201ENSMUST00000121722 873 ntBASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Gm5786-201ENSMUST00000085368 882 ntBASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lima1Q9ERG0 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Lima1Q9ERG0 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
Lima1Q9ERG0 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.51■□□□□ 0.87
Lima1Q9ERG0 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Gm7332-201ENSMUST00000118351 454 ntBASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Lima1Q9ERG0 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Lima1Q9ERG0 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Lima1Q9ERG0 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
Lima1Q9ERG0 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lima1Q9ERG0 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.47■□□□□ 0.87
Lima1Q9ERG0 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lima1Q9ERG0 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Lima1Q9ERG0 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lima1Q9ERG0 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lima1Q9ERG0 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lima1Q9ERG0 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Lima1Q9ERG0 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
Lima1Q9ERG0 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lima1Q9ERG0 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lima1Q9ERG0 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lima1Q9ERG0 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Lima1Q9ERG0 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lima1Q9ERG0 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Lima1Q9ERG0 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms