Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nr1h4Q60641 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nr1h4Q60641 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nr1h4Q60641 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.86■□□□□ 0.77
Nr1h4Q60641 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nr1h4Q60641 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nr1h4Q60641 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nr1h4Q60641 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nr1h4Q60641 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Nr1h4Q60641 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nr1h4Q60641 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nr1h4Q60641 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Nr1h4Q60641 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.83■□□□□ 0.77
Nr1h4Q60641 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
Nr1h4Q60641 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Nr1h4Q60641 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Nr1h4Q60641 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Nr1h4Q60641 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Nr1h4Q60641 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Nr1h4Q60641 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Nr1h4Q60641 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Nr1h4Q60641 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.82■□□□□ 0.76
Nr1h4Q60641 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Nr1h4Q60641 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.82■□□□□ 0.76
Nr1h4Q60641 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Nr1h4Q60641 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Nr1h4Q60641 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.82■□□□□ 0.76
Nr1h4Q60641 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Nr1h4Q60641 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Nr1h4Q60641 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.81■□□□□ 0.76
Nr1h4Q60641 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Nr1h4Q60641 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
Nr1h4Q60641 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.81■□□□□ 0.76
Nr1h4Q60641 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.8■□□□□ 0.76
Nr1h4Q60641 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Nr1h4Q60641 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nr1h4Q60641 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nr1h4Q60641 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nr1h4Q60641 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nr1h4Q60641 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.79■□□□□ 0.76
Nr1h4Q60641 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nr1h4Q60641 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Nr1h4Q60641 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Nr1h4Q60641 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Nr1h4Q60641 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Nr1h4Q60641 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nr1h4Q60641 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Nr1h4Q60641 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
Nr1h4Q60641 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Nr1h4Q60641 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Nr1h4Q60641 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Nr1h4Q60641 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.76■□□□□ 0.75
Nr1h4Q60641 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Nr1h4Q60641 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Nr1h4Q60641 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Nr1h4Q60641 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.75■□□□□ 0.75
Nr1h4Q60641 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Gm5987-201ENSMUST00000196433 1151 ntBASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms