Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col27a1Q5QNQ9 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.89■□□□□ 0.93
Col27a1Q5QNQ9 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col27a1Q5QNQ9 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col27a1Q5QNQ9 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col27a1Q5QNQ9 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col27a1Q5QNQ9 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col27a1Q5QNQ9 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.88■□□□□ 0.93
Col27a1Q5QNQ9 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col27a1Q5QNQ9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col27a1Q5QNQ9 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col27a1Q5QNQ9 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.87■□□□□ 0.93
Col27a1Q5QNQ9 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col27a1Q5QNQ9 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Col27a1Q5QNQ9 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.85■□□□□ 0.93
Col27a1Q5QNQ9 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col27a1Q5QNQ9 Gm10033-202ENSMUST00000211874 928 ntBASIC20.85■□□□□ 0.93
Col27a1Q5QNQ9 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col27a1Q5QNQ9 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Col27a1Q5QNQ9 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.84■□□□□ 0.93
Col27a1Q5QNQ9 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col27a1Q5QNQ9 Gm42642-201ENSMUST00000200683 355 ntBASIC20.84■□□□□ 0.93
Col27a1Q5QNQ9 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
Col27a1Q5QNQ9 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.83■□□□□ 0.93
Col27a1Q5QNQ9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col27a1Q5QNQ9 Gm40848-201ENSMUST00000221998 324 ntBASIC20.83■□□□□ 0.93
Col27a1Q5QNQ9 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Col27a1Q5QNQ9 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col27a1Q5QNQ9 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Col27a1Q5QNQ9 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col27a1Q5QNQ9 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col27a1Q5QNQ9 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col27a1Q5QNQ9 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col27a1Q5QNQ9 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.83■□□□□ 0.92
Col27a1Q5QNQ9 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Gm43060-201ENSMUST00000200621 289 ntBASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col27a1Q5QNQ9 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.81■□□□□ 0.92
Col27a1Q5QNQ9 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col27a1Q5QNQ9 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col27a1Q5QNQ9 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col27a1Q5QNQ9 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.81■□□□□ 0.92
Col27a1Q5QNQ9 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col27a1Q5QNQ9 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col27a1Q5QNQ9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Col27a1Q5QNQ9 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col27a1Q5QNQ9 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col27a1Q5QNQ9 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Col27a1Q5QNQ9 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col27a1Q5QNQ9 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col27a1Q5QNQ9 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col27a1Q5QNQ9 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col27a1Q5QNQ9 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col27a1Q5QNQ9 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col27a1Q5QNQ9 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col27a1Q5QNQ9 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col27a1Q5QNQ9 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.77■□□□□ 0.92
Col27a1Q5QNQ9 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col27a1Q5QNQ9 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col27a1Q5QNQ9 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col27a1Q5QNQ9 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col27a1Q5QNQ9 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col27a1Q5QNQ9 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Col27a1Q5QNQ9 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col27a1Q5QNQ9 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.75■□□□□ 0.91
Col27a1Q5QNQ9 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col27a1Q5QNQ9 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.75■□□□□ 0.91
Col27a1Q5QNQ9 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col27a1Q5QNQ9 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.74■□□□□ 0.91
Col27a1Q5QNQ9 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Col27a1Q5QNQ9 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Col27a1Q5QNQ9 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.74■□□□□ 0.91
Col27a1Q5QNQ9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col27a1Q5QNQ9 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col27a1Q5QNQ9 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col27a1Q5QNQ9 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col27a1Q5QNQ9 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col27a1Q5QNQ9 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col27a1Q5QNQ9 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms