Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col9a1Q05722 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.99■□□□□ 0.95
Col9a1Q05722 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col9a1Q05722 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col9a1Q05722 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Col9a1Q05722 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col9a1Q05722 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.98■□□□□ 0.95
Col9a1Q05722 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.98■□□□□ 0.95
Col9a1Q05722 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Col9a1Q05722 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col9a1Q05722 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col9a1Q05722 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.97■□□□□ 0.95
Col9a1Q05722 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.97■□□□□ 0.95
Col9a1Q05722 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col9a1Q05722 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col9a1Q05722 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col9a1Q05722 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Col9a1Q05722 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.96■□□□□ 0.95
Col9a1Q05722 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col9a1Q05722 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Col9a1Q05722 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Col9a1Q05722 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col9a1Q05722 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col9a1Q05722 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col9a1Q05722 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col9a1Q05722 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col9a1Q05722 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.94■□□□□ 0.94
Col9a1Q05722 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col9a1Q05722 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.94■□□□□ 0.94
Col9a1Q05722 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col9a1Q05722 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.94■□□□□ 0.94
Col9a1Q05722 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Col9a1Q05722 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.94■□□□□ 0.94
Col9a1Q05722 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.94■□□□□ 0.94
Col9a1Q05722 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col9a1Q05722 Gm40848-201ENSMUST00000221998 324 ntBASIC20.94■□□□□ 0.94
Col9a1Q05722 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col9a1Q05722 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col9a1Q05722 Gm10620-201ENSMUST00000098379 1332 ntBASIC20.94■□□□□ 0.94
Col9a1Q05722 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col9a1Q05722 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col9a1Q05722 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col9a1Q05722 Gm44487-201ENSMUST00000205145 325 ntBASIC20.93■□□□□ 0.94
Col9a1Q05722 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC20.93■□□□□ 0.94
Col9a1Q05722 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col9a1Q05722 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.93■□□□□ 0.94
Col9a1Q05722 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.93■□□□□ 0.94
Col9a1Q05722 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col9a1Q05722 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
Col9a1Q05722 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col9a1Q05722 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col9a1Q05722 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col9a1Q05722 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.91■□□□□ 0.94
Col9a1Q05722 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col9a1Q05722 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col9a1Q05722 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col9a1Q05722 Gm10812-201ENSMUST00000099864 546 ntBASIC20.91■□□□□ 0.94
Col9a1Q05722 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.9■□□□□ 0.94
Col9a1Q05722 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Col9a1Q05722 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 Gm9870-201ENSMUST00000063874 645 ntBASIC20.9■□□□□ 0.94
Col9a1Q05722 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col9a1Q05722 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col9a1Q05722 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.94
Col9a1Q05722 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.89■□□□□ 0.93
Col9a1Q05722 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col9a1Q05722 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col9a1Q05722 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.88■□□□□ 0.93
Col9a1Q05722 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC20.88■□□□□ 0.93
Col9a1Q05722 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col9a1Q05722 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col9a1Q05722 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col9a1Q05722 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.87■□□□□ 0.93
Col9a1Q05722 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col9a1Q05722 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col9a1Q05722 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.86■□□□□ 0.93
Col9a1Q05722 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col9a1Q05722 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col9a1Q05722 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col9a1Q05722 Gm13168-201ENSMUST00000121771 632 ntBASIC20.85■□□□□ 0.93
Col9a1Q05722 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.85■□□□□ 0.93
Col9a1Q05722 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col9a1Q05722 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col9a1Q05722 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col9a1Q05722 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col9a1Q05722 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col9a1Q05722 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col9a1Q05722 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Col9a1Q05722 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.83■□□□□ 0.93
Col9a1Q05722 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Col9a1Q05722 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.83■□□□□ 0.93
Col9a1Q05722 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col9a1Q05722 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms