Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC18.72■□□□□ 0.59
Pcdhgb8A0A140LI48 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.72■□□□□ 0.59
Pcdhgb8A0A140LI48 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pcdhgb8A0A140LI48 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Pcdhgb8A0A140LI48 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pcdhgb8A0A140LI48 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pcdhgb8A0A140LI48 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pcdhgb8A0A140LI48 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Pcdhgb8A0A140LI48 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdhgb8A0A140LI48 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm43566-201ENSMUST00000196851 808 ntBASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdhgb8A0A140LI48 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm45444-201ENSMUST00000211394 898 ntBASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC18.67■□□□□ 0.58
Pcdhgb8A0A140LI48 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.66■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Pcdhgb8A0A140LI48 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.66■□□□□ 0.58
Pcdhgb8A0A140LI48 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdhgb8A0A140LI48 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdhgb8A0A140LI48 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
Pcdhgb8A0A140LI48 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Pcdhgb8A0A140LI48 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Pcdhgb8A0A140LI48 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdhgb8A0A140LI48 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdhgb8A0A140LI48 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdhgb8A0A140LI48 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Pcdhgb8A0A140LI48 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdhgb8A0A140LI48 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdhgb8A0A140LI48 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms