Protein–RNA interactions for Protein: Q9QZS2

Rnf4, E3 ubiquitin-protein ligase RNF4, mousemouse

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf4Q9QZS2 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Rnf4Q9QZS2 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Rnf4Q9QZS2 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Mir449b-201ENSMUST00000104833 80 ntBASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gm16202-201ENSMUST00000117532 544 ntBASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gm6157-201ENSMUST00000199935 1897 ntBASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 AC211878.3-201ENSMUST00000222629 2018 ntBASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf4Q9QZS2 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf4Q9QZS2 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Gm14350-201ENSMUST00000116642 640 ntBASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf4Q9QZS2 Mir7023-201ENSMUST00000185093 64 ntBASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms