Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.73□□□□□ -0.53
Ddx28Q9CWT6 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm12960-201ENSMUST00000120017 1066 ntBASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm15806-201ENSMUST00000120696 955 ntBASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm9002-201ENSMUST00000178437 499 ntBASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Gm15222-202ENSMUST00000228667 1726 ntBASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Ddx28Q9CWT6 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 AC124433.1-202ENSMUST00000224762 1535 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Gm5124-202ENSMUST00000132683 2083 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Gm37368-201ENSMUST00000193173 3212 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Gm8598-201ENSMUST00000221184 836 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 CT030657.3-201ENSMUST00000222707 1200 ntBASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Ddx28Q9CWT6 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Ddx28Q9CWT6 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 89.3 ms