Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Smc1aQ9CU62 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Smc1aQ9CU62 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Smc1aQ9CU62 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Gm2991-201ENSMUST00000173338 480 ntBASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Gm6222-202ENSMUST00000182143 629 ntBASIC13.98□□□□□ -0.17
Smc1aQ9CU62 AC134335.2-201ENSMUST00000227660 440 ntBASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
Smc1aQ9CU62 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm15370-201ENSMUST00000117158 253 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm8805-201ENSMUST00000117848 313 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm14381-201ENSMUST00000122105 414 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm7895-201ENSMUST00000187459 1173 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm37489-201ENSMUST00000191883 159 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm37466-201ENSMUST00000195692 652 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm7118-201ENSMUST00000200167 1003 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm9176-201ENSMUST00000219955 1120 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm8227-201ENSMUST00000223306 571 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Gm43417-201ENSMUST00000201586 5207 ntBASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Smc1aQ9CU62 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Gm11658-201ENSMUST00000120913 1008 ntBASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC13.96□□□□□ -0.17
Smc1aQ9CU62 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms