Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sf3b1Q99NB9 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm9333-201ENSMUST00000205452 1323 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm12217-201ENSMUST00000118858 696 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm5070-201ENSMUST00000177599 862 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm32999-201ENSMUST00000192693 562 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm45598-202ENSMUST00000210719 986 ntBASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sf3b1Q99NB9 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm8913-201ENSMUST00000209491 641 ntBASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Sf3b1Q99NB9 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.22□□□□□ -0.29
Sf3b1Q99NB9 Gm28450-201ENSMUST00000187349 638 ntBASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms