Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm38223-201ENSMUST00000194484 695 ntBASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 AC101945.2-201ENSMUST00000227886 1377 ntBASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col28a1Q2UY11 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gm29649-201ENSMUST00000185649 419 ntBASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gm5276-201ENSMUST00000196683 1047 ntBASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gm6458-201ENSMUST00000211573 635 ntBASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col28a1Q2UY11 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms