Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Selenof-202ENSMUST00000106211 1178 ntTSL 3 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Ccl20-202ENSMUST00000113437 794 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm16158-201ENSMUST00000123509 785 ntTSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm16305-201ENSMUST00000140747 556 ntBASIC12.47□□□□□ -0.41
Col9a1Q05722 Snhg3-202ENSMUST00000141090 581 ntTSL 2 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm12111-201ENSMUST00000150073 349 ntTSL 3 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm15744-201ENSMUST00000161734 213 ntBASIC12.47□□□□□ -0.41
Col9a1Q05722 Speer4cos-201ENSMUST00000162113 1083 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Vmn1r155-201ENSMUST00000177632 924 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Vmn1r137-201ENSMUST00000177884 924 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Vmn1r130-201ENSMUST00000177936 924 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Vmn1r107-201ENSMUST00000179079 924 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Vmn1r165-201ENSMUST00000179594 924 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Ccl20-203ENSMUST00000186832 772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Rd3l-204ENSMUST00000190536 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm38007-201ENSMUST00000192187 313 ntBASIC12.47□□□□□ -0.41
Col9a1Q05722 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm43391-201ENSMUST00000196145 883 ntTSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm21847-202ENSMUST00000198681 883 ntTSL 5 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Gm45060-201ENSMUST00000203293 593 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.47□□□□□ -0.41
Col9a1Q05722 Cryab-205ENSMUST00000216755 836 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Lyrm2-201ENSMUST00000062802 465 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Ap5m1-205ENSMUST00000227431 3757 ntBASIC12.47□□□□□ -0.41
Col9a1Q05722 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col9a1Q05722 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Col9a1Q05722 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Zfand4-210ENSMUST00000223495 1751 ntTSL 5 BASIC12.46□□□□□ -0.41
Col9a1Q05722 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.46□□□□□ -0.41
Col9a1Q05722 0610037L13Rik-206ENSMUST00000120473 835 ntTSL 2 BASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm14832-201ENSMUST00000121289 322 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm4540-201ENSMUST00000170669 429 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 4930521E06Rik-201ENSMUST00000186732 905 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm37678-201ENSMUST00000192908 1146 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 Olfr184-ps1-201ENSMUST00000205922 516 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm270-201ENSMUST00000223010 976 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
Col9a1Q05722 AC154572.1-201ENSMUST00000226098 1204 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Rps25-201ENSMUST00000080300 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Tpbpb-201ENSMUST00000080766 850 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col9a1Q05722 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.46□□□□□ -0.41
Col9a1Q05722 Etv1-204ENSMUST00000160701 1578 ntTSL 5 BASIC12.46□□□□□ -0.42
Col9a1Q05722 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col9a1Q05722 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.46□□□□□ -0.42
Col9a1Q05722 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col9a1Q05722 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col9a1Q05722 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col9a1Q05722 Nupl1-207ENSMUST00000225311 2475 ntBASIC12.46□□□□□ -0.42
Col9a1Q05722 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col9a1Q05722 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Aebp2-205ENSMUST00000160836 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Phf7-206ENSMUST00000228437 1373 ntBASIC12.45□□□□□ -0.42
Col9a1Q05722 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.45□□□□□ -0.42
Col9a1Q05722 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
Col9a1Q05722 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Milr1-201ENSMUST00000086353 1348 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col9a1Q05722 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.45□□□□□ -0.42
Col9a1Q05722 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC12.45□□□□□ -0.42
Col9a1Q05722 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.45□□□□□ -0.42
Col9a1Q05722 Gm11502-201ENSMUST00000120917 1211 ntBASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms