Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm7049-201ENSMUST00000223520 1712 ntBASIC11.83□□□□□ -0.52
Cdx2P43241 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.82□□□□□ -0.52
Cdx2P43241 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdx2P43241 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdx2P43241 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm14460-201ENSMUST00000121511 639 ntBASIC11.82□□□□□ -0.52
Cdx2P43241 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm23119-201ENSMUST00000158610 140 ntBASIC11.82□□□□□ -0.52
Cdx2P43241 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx2P43241 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm43184-201ENSMUST00000197247 542 ntBASIC11.82□□□□□ -0.52
Cdx2P43241 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm6905-201ENSMUST00000205729 511 ntBASIC11.82□□□□□ -0.52
Cdx2P43241 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx2P43241 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.82□□□□□ -0.52
Cdx2P43241 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx2P43241 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx2P43241 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx2P43241 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cdx2P43241 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC11.81□□□□□ -0.52
Cdx2P43241 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cdx2P43241 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Cdx2P43241 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Cdx2P43241 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC11.81□□□□□ -0.52
Cdx2P43241 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.81□□□□□ -0.52
Cdx2P43241 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Cdx2P43241 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Cdx2P43241 Gm24891-201ENSMUST00000104391 136 ntBASIC11.81□□□□□ -0.52
Cdx2P43241 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.81□□□□□ -0.52
Cdx2P43241 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Cdx2P43241 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC11.81□□□□□ -0.52
Cdx2P43241 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC11.81□□□□□ -0.52
Cdx2P43241 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Cdx2P43241 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.81□□□□□ -0.52
Cdx2P43241 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.81□□□□□ -0.52
Cdx2P43241 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC11.81□□□□□ -0.52
Cdx2P43241 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC11.81□□□□□ -0.52
Cdx2P43241 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx2P43241 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms