Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Gm6023-201ENSMUST00000118217 606 ntBASIC11.55□□□□□ -0.56
Cd40lgP27548 Gm14704-201ENSMUST00000120300 874 ntBASIC11.55□□□□□ -0.56
Cd40lgP27548 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.55□□□□□ -0.56
Cd40lgP27548 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC11.55□□□□□ -0.56
Cd40lgP27548 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.55□□□□□ -0.56
Cd40lgP27548 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.55□□□□□ -0.56
Cd40lgP27548 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cd40lgP27548 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cd40lgP27548 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm12502-201ENSMUST00000120197 444 ntBASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm12363-201ENSMUST00000122250 668 ntBASIC11.54□□□□□ -0.56
Cd40lgP27548 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.54□□□□□ -0.56
Cd40lgP27548 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm5781-201ENSMUST00000219792 443 ntBASIC11.54□□□□□ -0.56
Cd40lgP27548 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.54□□□□□ -0.56
Cd40lgP27548 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cd40lgP27548 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cd40lgP27548 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cd40lgP27548 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Cd40lgP27548 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cd40lgP27548 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cd40lgP27548 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cd40lgP27548 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC11.53□□□□□ -0.56
Cd40lgP27548 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cd40lgP27548 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cd40lgP27548 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cd40lgP27548 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Cd40lgP27548 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cd40lgP27548 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.53□□□□□ -0.56
Cd40lgP27548 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 85.5 ms