Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Scoc-209ENSMUST00000212905 798 ntAPPRIS P3 TSL 3 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC9.88□□□□□ -0.83
Hoxd3P09027 AC113082.2-201ENSMUST00000215876 756 ntTSL 3 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Zfp865-202ENSMUST00000076791 1129 ntBASIC9.88□□□□□ -0.83
Hoxd3P09027 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 3110062G12Rik-201ENSMUST00000192113 1419 ntBASIC9.88□□□□□ -0.83
Hoxd3P09027 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gm8228-201ENSMUST00000189949 2192 ntBASIC9.88□□□□□ -0.83
Hoxd3P09027 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Pla2g5-201ENSMUST00000030524 2131 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Gm10305-201ENSMUST00000195331 2475 ntBASIC9.88□□□□□ -0.83
Hoxd3P09027 Ntrk2-204ENSMUST00000224259 3049 ntBASIC9.88□□□□□ -0.83
Hoxd3P09027 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hoxd3P09027 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC9.88□□□□□ -0.83
Hoxd3P09027 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC9.87□□□□□ -0.83
Hoxd3P09027 4930551O13Rik-201ENSMUST00000145585 1065 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm7584-201ENSMUST00000175829 940 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm37213-201ENSMUST00000193077 586 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm6621-201ENSMUST00000193251 772 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm37466-201ENSMUST00000195692 652 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Higd1a-202ENSMUST00000213124 713 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 AC160061.1-201ENSMUST00000217766 533 ntTSL 3 BASIC9.87□□□□□ -0.83
Hoxd3P09027 AC156572.1-201ENSMUST00000221040 1161 ntTSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm9257-201ENSMUST00000221254 232 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 AC168059.2-201ENSMUST00000224473 333 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 AC160962.2-201ENSMUST00000224761 632 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Morn2-202ENSMUST00000227729 656 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Spata4-201ENSMUST00000033917 1057 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm24526-201ENSMUST00000082921 158 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm38325-201ENSMUST00000194507 1377 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 65.1 ms