Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm11400-201ENSMUST00000120853 1214 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm6888-201ENSMUST00000221983 706 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC10.31□□□□□ -0.76
Hmgb3O54879 AC140397.2-201ENSMUST00000224213 834 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 AC154276.1-201ENSMUST00000228874 1299 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Arid1b-203ENSMUST00000115799 9888 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm37437-201ENSMUST00000194451 1937 ntBASIC10.31□□□□□ -0.76
Hmgb3O54879 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 AC154305.4-201ENSMUST00000224520 614 ntBASIC10.3□□□□□ -0.76
Hmgb3O54879 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Cacna1d-202ENSMUST00000112250 8688 ntAPPRIS P4 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 AC096628.2-201ENSMUST00000225443 1413 ntBASIC10.3□□□□□ -0.76
Hmgb3O54879 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gm45684-201ENSMUST00000210244 1571 ntBASIC10.3□□□□□ -0.76
Hmgb3O54879 Dzank1-201ENSMUST00000081982 6847 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Ctnnd1-207ENSMUST00000111676 5852 ntTSL 5 BASIC10.3□□□□□ -0.76
Hmgb3O54879 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hmgb3O54879 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm29100-201ENSMUST00000187564 4410 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm10040-201ENSMUST00000080726 1662 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm7336-201ENSMUST00000107041 1232 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm4204-201ENSMUST00000110798 1231 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hmgb3O54879 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC10.29□□□□□ -0.76
Hmgb3O54879 Gm4875-201ENSMUST00000118257 786 ntBASIC10.29□□□□□ -0.76
Hmgb3O54879 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms