Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm37042-201ENSMUST00000193816 581 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm19184-201ENSMUST00000196798 928 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm19309-201ENSMUST00000218295 205 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Matn2-203ENSMUST00000226766 3252 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Gm45053-201ENSMUST00000206112 2499 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 AC166574.4-201ENSMUST00000227165 1937 ntBASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim3Q9R1R2 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.77□□□□□ -0.52
Trim3Q9R1R2 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim3Q9R1R2 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm22018-201ENSMUST00000104357 131 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm12363-201ENSMUST00000122250 668 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm25261-201ENSMUST00000157416 134 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm37008-201ENSMUST00000195712 319 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 AC138604.1-201ENSMUST00000226969 739 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim3Q9R1R2 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms