Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gm9257-201ENSMUST00000221254 232 ntBASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm9083-201ENSMUST00000120423 819 ntBASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm3096-201ENSMUST00000185770 364 ntBASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cpsf3Q9QXK7 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Gm25668-201ENSMUST00000157700 129 ntBASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Gm26083-201ENSMUST00000157904 193 ntBASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Gm18615-201ENSMUST00000222919 1031 ntBASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms