Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Gm23595-201ENSMUST00000104306 130 ntBASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Gm12972-201ENSMUST00000152986 1006 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Eif5a-212ENSMUST00000153652 840 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 9530085P06Rik-201ENSMUST00000182121 827 ntBASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Fthl17e-201ENSMUST00000096509 841 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm10807-201ENSMUST00000177134 795 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Olfr1335-202ENSMUST00000219094 1148 ntAPPRIS P2 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Olfr1335-201ENSMUST00000084313 1148 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Olfr1156-202ENSMUST00000216191 3300 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm37795-201ENSMUST00000194216 2459 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm16547-201ENSMUST00000159474 293 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm28937-201ENSMUST00000185413 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm29400-201ENSMUST00000187208 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm28662-201ENSMUST00000188446 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm28251-201ENSMUST00000188835 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm37318-201ENSMUST00000194325 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm38017-201ENSMUST00000194768 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm37287-201ENSMUST00000195449 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm37793-201ENSMUST00000195548 695 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Ighv1-70-201ENSMUST00000196509 351 ntBASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm46210-201ENSMUST00000218800 577 ntTSL 3 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Scn4aQ9ER60 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 AC166361.2-201ENSMUST00000219269 1415 ntBASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm37014-201ENSMUST00000194723 2253 ntBASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm18256-201ENSMUST00000209087 907 ntBASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm9736-201ENSMUST00000219969 834 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 CT573047.1-201ENSMUST00000223652 851 ntBASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm43167-201ENSMUST00000202001 1606 ntBASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Gm15519-201ENSMUST00000120088 1566 ntBASIC16.53■□□□□ 0.24
Scn4aQ9ER60 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms