Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gm37737-201ENSMUST00000195013 1638 ntBASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gm30285-201ENSMUST00000214614 422 ntBASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gm9004-201ENSMUST00000218739 1222 ntBASIC12.81□□□□□ -0.36
Vps28Q9D1C8 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Vps28Q9D1C8 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm11531-201ENSMUST00000117614 555 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm27023-201ENSMUST00000182372 285 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm37201-201ENSMUST00000191845 523 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 AC166095.1-201ENSMUST00000223731 1241 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Vps28Q9D1C8 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms