Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Usp11Q99K46 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.18□□□□□ -0.3
Usp11Q99K46 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp11Q99K46 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Usp11Q99K46 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.17□□□□□ -0.3
Usp11Q99K46 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Gm26185-201ENSMUST00000157692 266 ntBASIC13.17□□□□□ -0.3
Usp11Q99K46 Snora78-201ENSMUST00000158630 128 ntBASIC13.17□□□□□ -0.3
Usp11Q99K46 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Tyms-ps-201ENSMUST00000219550 915 ntBASIC13.17□□□□□ -0.3
Usp11Q99K46 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.17□□□□□ -0.3
Usp11Q99K46 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.17□□□□□ -0.3
Usp11Q99K46 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp11Q99K46 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Usp11Q99K46 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.16□□□□□ -0.3
Usp11Q99K46 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp11Q99K46 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp11Q99K46 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp11Q99K46 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.16□□□□□ -0.3
Usp11Q99K46 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC13.16□□□□□ -0.3
Usp11Q99K46 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.16□□□□□ -0.3
Usp11Q99K46 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.16□□□□□ -0.3
Usp11Q99K46 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.16□□□□□ -0.3
Usp11Q99K46 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp11Q99K46 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
Usp11Q99K46 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms