Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Ubfd1Q78JW9 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ubfd1Q78JW9 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm13296-201ENSMUST00000117854 997 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm4760-201ENSMUST00000119663 1030 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm5070-201ENSMUST00000177599 862 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm25700-201ENSMUST00000177693 110 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm44958-201ENSMUST00000203734 736 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gzmn-202ENSMUST00000225535 989 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm37861-201ENSMUST00000193534 2869 ntBASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ubfd1Q78JW9 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm45495-201ENSMUST00000200940 1700 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm2260-201ENSMUST00000184965 657 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm32999-201ENSMUST00000192693 562 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm42937-201ENSMUST00000197360 752 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm19187-201ENSMUST00000206781 892 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ubfd1Q78JW9 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms