Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Gm10268-201ENSMUST00000085340 555 ntBASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Map1b-203ENSMUST00000223725 2669 ntBASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Gm22018-201ENSMUST00000104357 131 ntBASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Gm27516-201ENSMUST00000184237 98 ntBASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Gm37922-201ENSMUST00000195596 455 ntBASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Gm9257-201ENSMUST00000221254 232 ntBASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sh3rf1Q69ZI1 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Gm17383-201ENSMUST00000078739 1041 ntBASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sh3rf1Q69ZI1 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms