Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm23596-201ENSMUST00000104304 132 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm12795-201ENSMUST00000117594 539 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm15881-201ENSMUST00000148792 942 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC11.37□□□□□ -0.59
Usf1Q61069 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Usf1Q61069 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm5733-201ENSMUST00000190232 939 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Gm19994-201ENSMUST00000217086 586 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm43056-201ENSMUST00000197865 2791 ntBASIC11.37□□□□□ -0.59
Usf1Q61069 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Usf1Q61069 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC11.36□□□□□ -0.59
Usf1Q61069 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm12623-201ENSMUST00000119849 1983 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm15703-201ENSMUST00000120250 880 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC11.36□□□□□ -0.59
Usf1Q61069 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm23085-201ENSMUST00000157849 293 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Gm9358-201ENSMUST00000183067 927 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm29155-201ENSMUST00000185910 269 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC11.36□□□□□ -0.59
Usf1Q61069 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm807-202ENSMUST00000224929 408 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Usf1Q61069 Il17rd-203ENSMUST00000225146 3366 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Usf1Q61069 Gm13142-201ENSMUST00000117213 1453 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC11.36□□□□□ -0.59
Usf1Q61069 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Usf1Q61069 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms