Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Limch1Q3UH68 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.72□□□□□ -0.05
Limch1Q3UH68 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Limch1Q3UH68 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.72□□□□□ -0.05
Limch1Q3UH68 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Rn7s1-201ENSMUST00000174924 300 ntBASIC14.71□□□□□ -0.05
Limch1Q3UH68 Rn7s2-201ENSMUST00000175032 300 ntBASIC14.71□□□□□ -0.05
Limch1Q3UH68 Gm26461-201ENSMUST00000175064 290 ntBASIC14.71□□□□□ -0.05
Limch1Q3UH68 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Gm38092-201ENSMUST00000195600 653 ntBASIC14.71□□□□□ -0.05
Limch1Q3UH68 Gm21769-201ENSMUST00000211922 111 ntBASIC14.71□□□□□ -0.05
Limch1Q3UH68 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Limch1Q3UH68 CT009757.3-201ENSMUST00000223367 2320 ntBASIC14.71□□□□□ -0.05
Limch1Q3UH68 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Limch1Q3UH68 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm4735-201ENSMUST00000138679 1302 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm5855-201ENSMUST00000200240 1305 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm20482-202ENSMUST00000174729 825 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.7□□□□□ -0.06
Limch1Q3UH68 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Limch1Q3UH68 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.69□□□□□ -0.06
Limch1Q3UH68 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.69□□□□□ -0.06
Limch1Q3UH68 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Limch1Q3UH68 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms